Johannes Cairns profile picture

Johannes
Cairns

Docent, Department of Biology
Collegium Researcher, Physiology and Genetics

Areas of expertise

ecology & evolution
resistance & resilience
bioinformatics
microbial model systems

Biography

I am a Collegium Researcher (Title of Docent in Evolutionary Genetics and Bioinformatics, 2023) at the University of Turku, where I lead the Microbial Evolutionary Genetics Lab (utu.fi/meg/). My research focuses on the eco-evolutionary dynamics of microbial communities, antibiotic resistance, and resilience, combining experimental evolution, molecular microbiology, and bioinformatics. I received my PhD in Microbiology from the University of Helsinki in 2018 and have since worked in Finland and the UK. I have authored more than 25 peer-reviewed articles and actively contribute to scientific collaboration, teaching, and science communication. In addition to the University of Turku, I am affiliated with the Department of Computer Science and Organismal and Evolutionary Biology Research Programme, University of Helsinki, and the Finnish Multidisciplinary Center of Excellence in Antimicrobial Resistance Research (FIMAR). Besides my science training, I also have academic training (PhD) and publications in environmental humanities, and am a founding and active member in One Health Finland (est. 2016), reflecting my broad interest in systemic approaches to global health and environmental challenges.

Teaching

I have taught at bachelor’s, master’s, and doctoral levels, with experience ranging from lectures and seminars to workshops and curriculum development. My teaching has focused on microbiology, experimental evolution, molecular genetics, and bioinformatics, including international training initiatives. I have also co-designed course material and supervised students across degree levels.

Research

I study the eco-evolutionary dynamics of microbial communities, with a particular focus on how they adapt to environmental disturbances and antibiotic stress. By combining experimental evolution, genetic engineering, and bioinformatics, I aim to uncover the mechanisms that shape microbial resistance, resilience, and community interactions.

Publications

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Understanding and applying biological resilience, from genes to ecosystems (2023)

NPJ Biodiversity
Thorogood Rose, Mustonen Ville, Aleixo Alexandre, Aphalo Pedro J., Asiegbu Fred O., Cabeza Mar, Cairns Johannes, Candolin Ulrika, Cardoso Pedro, Eronen Jussi T., Hällfors Maria, Hovatta Iiris, Juslén Aino, Kovalchuk Andriy, Kulmuni Jonna, Kuula Liisa, Mäkipää Raisa, Ovaskainen Otso, Pesonen Anu-Katriina, Primmer Craig R., Saastamoinen Marjo, Schulman Alan H., Schulman Leif, Strona Giovanni, Vanhatalo Jarno
(Vertaisarvioitu katsausartikkeli tieteellisessä aikakauslehdessä (A2))

Towards evolutionary predictions: Current promises and challenges (2023)

Wortel MT, Agashe D, Bailey SF, Bank C, Bisschop K, Blankers T, Cairns J, Colizzi ES, Cusseddu D, Desai MM, van Dijk B, Egas M, Ellers J, Groot AT, Heckel DG, Johnson ML, Kraaijeveld K, Krug J, Laan L, Lassig M, Lind PA, Meijer J, Noble LM, Okasha S, Rainey PB, Rozen DE, Shitut S, Tans SJ, Tenaillon O, Teotonio H, de Visser JAGM, Visser ME, Vroomans RMA, Werner GDA, Wertheim B, Pennings PS
(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))