All Publications of Biochemistry Unit

What does it take to be a collagen receptor? (2023)

Matrix Biology

Farndale Richard, Sonnenberg Arnoud, DiPersio C Michael, Eble Johannes A, Heino Jyrki, Gullberg Donald

(Article or data-article in scientific journal (B1))

Benchmarking blood collection tubes and processing intervals for extracellular vesicle performance metrics (2023)

Journal of Extracellular Vesicles

Dhondt B, Pinheiro C, Geeurickx E, Tulkens J, Vergauwen G, van der Pol E, Nieuwland R, Decock A, Miinalainen I, Rappu P, Schroth G, Kuersten S, Vandesompele J, Mestdagh P, Lumen N, De Wever O, Hendrix A

(Refereed journal article or data article (A1))

Inhibition of TGF-β signaling, invasion, and growth of cutaneous squamous cell carcinoma by PLX8394 (2023)

Oncogene

Siljamäki Elina, Riihilä Pilvi, Suwal Ujjwal, Nissinen Liisa, Rappu Pekka, Kallajoki Markku, Kähäri Veli-Matti, Heino Jyrki

(Refereed journal article or data article (A1))

Deletion of competence genes represses expression of genes associated with anaerobic respiration/metabolism in Aggregatibacter actinomycetemcomitans (2023)

bioRxiv

Vahvelainen Nelli, Kovesjoki Laura, Maula Terhi, Ihalin Riikka

(Other publication)

Tannins Can Have Direct Interactions with Anthelmintics: Investigations by Isothermal Titration Calorimetry (2023)

Molecules

Sillanpää Mimosa, Engström Marica T.,Tähtinen Petri, Green Rebecca J., Käpylä Jarmo, Näreaho Anu, Karonen Maarit

(Refereed journal article or data article (A1))

Unravelling key enzymatic steps in C-ring cleavage during angucycline biosynthesis (2023)

Communications chemistry

Elsayed Somayah S., van der Heul Helga U., Xiao Xiansha, Nuutila Aleksi, Baars Laura R., Wu Changsheng, Metsä-Ketelä Mikko, van Wezel Gilles P.

(Refereed journal article or data article (A1))

Characterization of the genetic diversity of Citrus species of Nepal using simple sequence repeat (SSR) markers (2023)

South African Journal of Botany

Munankarmi Nabin Narayan, Rana Neesha, Joshi Bal Krishna, Bhattarai Tribikram, Chaudhary Sujan, Baral Bikash, Shrestha Sangita

(Refereed journal article or data article (A1))

Integrating automated liquid handling in the separation workflow of extracellular vesicles enhances specificity and reproducibility (2023)

Journal of Nanobiotechnology

Van Dorpe Sofie, Lippens Lien, Boiy Robin, Pinheiro Cláudio, Vergauwen Glenn, Rappu Pekka, Miinalainen Ilkka, Tummers Philippe, Denys Hannelore, De Wever Olivier, Hendrix An

(Refereed journal article or data article (A1))

Co-factor independent oxidases ncnN and actVA-3 are involved in the dimerization of benzoisochromanequinone antibiotics in naphthocyclinone and actinorhodin biosynthesis (2023)

FEMS Microbiology Letters

Baral Bikash, Matroodi Soheila, Siitonen Vilja, Thapa Keshav, Akhgari Amir, Yamada Keith, Nuutila Aleksi, Metsä-Ketelä Mikko

(Refereed journal article or data article (A1))

Pseudouridine-Modifying Enzymes SapB and SapH Control Entry into the Pseudouridimycin Biosynthetic Pathway (2023)

ACS Chemical Biology

Artukka Erika, Schnell Robert, Palmu Kaisa, Rosenqvist Petja, Szodorai Edit, Niemi Jarmo, Virta Pasi, Schneider Gunter, Metsä-Ketelä Mikko

(Refereed journal article or data article (A1))

The association of voice problems with exposure to indoor air contaminants in health care centres - the effect of remediation on symptom prevalence: A follow-up study (2023)

Indoor and Built Environment

Vilén Liisa, Atosuo Janne, Putus Tuula

(Refereed journal article or data article (A1))

Loppuraportti Työsuojelurahaston projektiin #210375 : Työperäisen stressin yhteys oireiluun ja stressin aiheuttama uhka työkyvylle (2023)

Putus Tuula, Vilén Liisa, Suominen Eetu, Atosuo Janne

(Published development or research report or study (D4))

Directing cellular responses in a nanocomposite 3D matrix for tissue regeneration with nanoparticle-mediated drug delivery (2023)

Materials today. Bio

Özliseli Ezgi, Sanlidag Sami, Süren Behice, Mahran Alaa, Parikainen Marjaana, Sahlgren Cecilia, Rosenholm Jessica M.

(Refereed journal article or data article (A1))

Molecular Variation and Phylogeny within Fusarium avenaceum and Related Species (2022)

Diversity

Yli-Mattila Tapani, Abbas Asmaa, Gavrilova Olga, Gagkaeva Tatiana

(Refereed journal article or data article (A1))

Dysregulation of secondary bile acid metabolism precedes islet autoimmunity and type 1 diabetes (2022)

Cell Reports Medicine

Lamichhane Santosh, Sen Partho, Dickens Alex M., Alves Marina Amaral, Härkönen Taina, Honkanen Jarno, Vatanen Tommi, Xavier Ramnik J., Hyötyläinen Tuulia, Knip Mikael, Oresic Matej

(Refereed journal article or data article (A1))

Inflammation-related citrullination of matrisome proteins in human cancer (2022)

Frontiers in Oncology

Rappu Pekka, Suwal Ujjwal, Siljamäki Elina, Heino Jyrki

(Refereed journal article or data article (A1))

The role of the maleimide ring system on the structure-activity relationship of showdomycin (2022)

European Journal of Medicinal Chemistry

Rosenqvist Petja, Mäkinen Janne J, Palmu Kaisa, Jokinen Johanna, Prajapati Ranjit K, Korhonen Heidi J, Virta Pasi, Belogurov Georgiy A, Metsä-Ketelä Mikko

(Refereed journal article or data article (A1))

Transferring from moisture damaged school building to clean facilities - The avoidance of mold exposure induces a decline in symptoms and improvement in lung function among personnel (2022)

Environmental Research

Vilén Liisa, Päivinen Marja, Atosuo Janne, Putus Tuula

(Refereed journal article or data article (A1))

Archaic chaperone-usher pili self-secrete into superelastic zigzag springs (2022)

Nature

Pakharukova N, Malmi H, Tuittila M, Dahlberg T, Ghosal D, Chang YW, Myint SL, Paavilainen S, Knight SD, Lamminmäki U, Uhlin BE, Andersson M, Jensen G, Zavialov AV

(Refereed journal article or data article (A1))

Birth of a poly(A) tail: mechanisms and control of mRNA polyadenylation (2022)

FEBS Open Bio

Rodríguez-Molina Juan B, Turtola Matti

(Refereed review article in scientific journal (A2))