Sini Junttila

CellRomeR: an R package for clustering cell migration phenotypes from microscopy data (2025)

Bioinformatics Advances

Kleino, Iivari; Perk, Mats; Sousa, António G G; Linden, Markus; Mathlin, Julia; Giesel, Daniel; Frolovaite, Paulina; Pietilä, Sami; Junttila, Sini; Suomi, Tomi; Elo, Laura L

(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )

Coralysis enables sensitive identification of imbalanced cell types and states in single-cell data via multi-level integration (2025)

Nucleic Acids Research

Sousa, António G. G.; Smolander, Johannes; Junttila, Sini; Elo, Laura L.

(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )

Sketching T cell atlases in the single‐cell era: challenges and recommendations (2025)

Immunology and Cell Biology

Bojović, Itana; Sousa, António GG.; Junttila, Sini; Elo, Laura L.

(A2 Vertaisarvioitu katsausartikkeli tieteellisessä lehdessä)

LINC01871 is exclusively expressed in T and NK cells and is highly induced upon CD4+ T cell activation (2025)

iScience

Kalim, Ubaid Ullah; Shetty, Ankitha; Ranade, Amogh; Rundquist, Olof; Starskaia, Inna; Batkulwar, Kedar; Välikangas, Tommi; Sousa, António G. G.; Hurme, Antti; Kumpulainen, Venla; Viitala, Miro; Kosola, Sakari; Junttila, Sini; Rasool, Omid; Elo, Laura L.; Galande, Sanjeev; Lahesmaa, Riitta

(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )

A Metabolite-Based Resistance Mechanism Against Malaria (2025)

Science

Figueiredo, Ana; Rastogi, Sonia Trikha; Ramos, Susana; Nogueira, Fátima; De Villiers, Katherine; Sousa, António GG; Votborg-Novél, Lasse; von Wedel, Cäcilie; Tober-Lau, Pinkus; Jentho, Elisa; Pagnotta, Sara; Mesquita, Miguel; Cardoso, Silvia; Bortolussi, Giulia; Muro, Andrés F; Tranfield, Erin M; Thibaud, Jessica; Duarte, Denise; Sousa, Ana Laura; Pinto, Sandra N; Kitoko, Jamil; Mombo-Ngoma, Ghyslain; Mischlinger, Johannes; Junttila, Sini; Alenquer, Marta; Amorim, Maria João; Vasavda, Chirag; Bosma, Piter J; Violante, Sara; Drotleff, Bernhard; Paixão, Tiago; Portugal, Silvia; Kurth, Florian; Elo, Laura L; Paul, Bindu D; Martins, Rui; Soares, Miguel P

(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )

Inferring Tree-Shaped Single-Cell Trajectories with Totem (2024)

Methods in Molecular Biology

Sousa, António GG; Smolander, Johannes; Junttila, Sini; Elo, Laura L.

(A3 Vertaisarvioitu kirjan tai muun kokoomateoksen osa)

Long noncoding RNA LIRIL2R modulates FOXP3 levels and suppressive function of human CD4+ regulatory T cells by regulating IL2RA (2024)

Proceedings of the National Academy of Sciences of the United States of America

Andrabi, Syed Bilal Ahmad; Kalim, Ubaid Ullah; Palani, Senthil; Khan, Mohd Moin; Khan, Meraj Hasan; Fagersund, Jimmy; Orpana, Julius; Paulin, Niklas; Batkulwar, Kedar; Junttila, Sini; Buchacher, Tanja; Grönroos, Toni; Toikka, Lea; Ammunet, Tea; Sen, Partho; Orešič, Matej; Kumpulainen, Venla; Tuomisto, Johanna E. E.; Sinha, Rahul; Marson, Alexander; Rasool, Omid; Elo, Laura L.; Lahesmaa, Riitta

(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )

ECCB2024: The 23rd European Conference on Computational Biology (2024)

Bioinformatics

Kukkonen-Macchi, A; Hautaniemi, S; Heil, KF; Heinäniemi, M; Jensen, LJ; Junttila, S; Käll, L; Laiho, A; Maccallum, P; Nykter, M; Persson, B; Suomi, T; Van Den Bossche, T; Nyrönen, TH; Elo, LL

(B1 Vertaisarvioimaton kirjoitus tieteellisessä lehdessä )

A proximal enhancer regulates RORA expression during early human Th17 cell differentiation (2024)

Clinical Immunology

Kalim, Ubaid Ullah; Biradar, Rahul; Junttila, Sini; Khan, Mohd Moin; Tripathi, Subhash; Khan, Meraj Hasan; Smolander, Johannes; Kanduri, Kartiek; Envall, Tapio; Laiho, Asta; Marson, Alexander; Rasool, Omid; Elo, Laura L.; Lahesmaa Riitta

(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )

Cell-connectivity-guided trajectory inference from single-cell data (2023)

Bioinformatics

Smolander Johannes, Junttila Sini, Elo Laura L.

(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )

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CellRomeR: an R package for clustering cell migration phenotypes from microscopy data (2025)

Coralysis enables sensitive identification of imbalanced cell types and states in single-cell data via multi-level integration (2025)

Sketching T cell atlases in the single‐cell era: challenges and recommendations (2025)

LINC01871 is exclusively expressed in T and NK cells and is highly induced upon CD4+ T cell activation (2025)

A Metabolite-Based Resistance Mechanism Against Malaria (2025)

Inferring Tree-Shaped Single-Cell Trajectories with Totem (2024)

Long noncoding RNA LIRIL2R modulates FOXP3 levels and suppressive function of human CD4+ regulatory T cells by regulating IL2RA (2024)

ECCB2024: The 23rd European Conference on Computational Biology (2024)

A proximal enhancer regulates RORA expression during early human Th17 cell differentiation (2024)

Cell-connectivity-guided trajectory inference from single-cell data (2023)