Manu
Tamminen
Docent, Department of Biology
Academy Research Fellow, Physiology and Genetics
PhD, Docent
Contact
Areas of expertise
Molecular biology
Bioinformatics
Microbial Genetics
Microbial Ecology
Biography
- MSc, University of Turku, 2002
- PhD, University of Helsinki, 2011
- Post-doc, MIT, 2011-2013
- Post-doc, ETH Zürich, 2014-2017
- Adjunct professor, University of Turku, 2017
- Senior lecturer, University of Turku, 2017-
Teaching
- SOMO1021 - Advanced genetics (2018)
- FYGE2242 - Laboratory course of microbial genetics (2018)
- BIOL1301 - Fundamentals of genetics (2018)
- FYGE 4031 - Laboratory methods in genetics (2018)
- BIOL3050 - Bioinformatics for biologists (2019)
- BIOL3200 - BSc seminars (2019)
- BIOL1301 - Fundamentals of genetics (2019)
- FYGE 4031 - Laboratory methods in genetics (2019)
Research
- Single cell genomics of bacteria and small eukaryotes
- Horizontal transfer of antibiotic resistance genes
- Quantitative applications of NGS
Publications
Evaluation of Bridge Capture technology for mutation profiling in liquid biopsies of metastatic colorectal cancer patients (2025)
Scientific Reports
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )
Polyacrylamide bead split-pool method for microbial community analysis (2025)
bioRxiv
(O2 Muu julkaisu )
Cellular heterogeneity in metabolism and associated microbiome of a non-model phytoflagellate (2025)
ISME Journal
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )
Glyphosate and phosphate treatments in soil differentially affect crop microbiomes depending on species, tissue and growth stage (2025)
Scientific Reports
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )
High-Throughput Multiplex Detection of Antibiotic-Resistant Genes and Virulence Factors in Escherichia coli Using Digital Multiplex Ligation Assay (2025)
Journal of Molecular Diagnostics
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )
Glyphosate residues in soil and phosphate fertilizer affect foliar endophytic microbial community composition and phytohormone levels in potato (2024)
Phytobiomes journal
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )
Foundation species stabilize an alternative eutrophic state in nutrient disturbed ponds via selection on microbial community (2024)
Frontiers in Microbiology
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )
The role of early life factors and green living environment in the development of gut microbiota in infancy : Population-based cohort study (2024)
Environment International
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )
Complete genome sequences of 30 bacterial species from a synthetic community (2024)
Microbiology resource announcements
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )
Molecular Characterisation of Faecal Bacterial Assemblages Among Four Species of Syntopic Odonates (2023)
Microbial Ecology
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )