Sampo Pyysalo

S1000: a better taxonomic name corpus for biomedical information extraction (2023)

Bioinformatics

Luoma Jouni, Nastou Katerina, Ohta Tomoko, Toivonen Harttu, Pafilis Evangelos, Jensen Lars Juhl, Pyysalo Sampo

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest (2023)

Nucleic Acids Research

Szklarczyk Damian, Kirsch Rebecca, Koutrouli Mikaela, Nastou Katerina, Mehryary Farrokh, Hachilif Radja, Gable Annika L, Fang Tao, Doncheva Nadezha T, Pyysalo Sampo, Bork Peer, Jensen Lars J, von Mering Christian

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

Register identification from the unrestricted open Web using the Corpus of Online Registers of English (2022)

Language Resources and Evaluation

Laippala Veronika, Rönnqvist Samuel, Oinonen Miika, Kyröläinen Aki-Juhani, Salmela Anna, Biber Douglas, Egbert Jesse, Pyysalo Sampo

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

Towards better structured and less noisy Web data: Oscar with Register annotations (2022)

International Conference on Computational Linguistics, International Conference on Computational Linguistics

Laippala Veronika, Salmela Anna, Rönnqvist Samuel, Aji Alham Fikri, Chang Li-Hsin, Dhifallah Asma, Goulart Larissa, Kortelainen Henna, Pàmies Marc, Prina Dutra Deise, Skantsi Valtteri, Sutawika Lingtang, Pyysalo Sampo

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Fine-grained Named Entity Annotation for Finnish (2021)

Nordic Conference on Computational Linguistics, Linköping Electronic Conference Proceedings

Luoma Jouni, Chang Li-Hsin, Ginter Filip, Pyysalo Sampo

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Deep learning for sentence clustering in essay grading support (2021)

International Conference on Educational Data Mining

Chang Li-Hsin, Rastas Iiro, Pyysalo Sampo, Ginter Filip

(Artikkeli ammatillisessa konferenssijulkaisussa (D3))

Correction to 'The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets' (vol 49, pg D605, 2021) (2021)

Nucleic Acids Research

Szklarczyk D, Gable AL, Nastou KC, Lyon D, Kirsch R, Pyysalo S, Doncheva NT, Legeay M, Fang T, Bork P, Jensen LJ, von Mering C

(Muu (O2))

WikiBERT Models: Deep Transfer Learning for Many Languages (2021)

Nordic Conference on Computational Linguistics, Linköping Electronic Conference Proceedings

Pyysalo Sampo, Kanerva Jenna, Virtanen Antti, Ginter Filip

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Overview of DrugProt BioCreative VII track: quality evaluation and large scale text mining of drug-gene/protein relations (2021)

BioCreative

Miranda Antonio, Mehryary Farrokh, Luoma Jouni, Pyysalo Sampo, Valencia Alfonso, Krallinger Martin

(Vertaisarvioimaton konferenssijulkaisu (B3))

Beyond the English web: Zero-shot cross-lingual and lightweight monolingual classification of registers (2021)

European Chapter of the Association for Computational Linguistics

Repo Liina, Skantsi Valtteri, Rönnqvist Samuel, Hellström Saara, Oinonen Miika, Salmela Anna, Biber Douglas, Egbert Jesse, Pyysalo Sampo, Laippala Veronika

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Contact

Links

Julkaisut

Järjestä:

S1000: a better taxonomic name corpus for biomedical information extraction (2023)

The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest (2023)

Register identification from the unrestricted open Web using the Corpus of Online Registers of English (2022)

Towards better structured and less noisy Web data: Oscar with Register annotations (2022)

Fine-grained Named Entity Annotation for Finnish (2021)

Deep learning for sentence clustering in essay grading support (2021)

Correction to 'The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets' (vol 49, pg D605, 2021) (2021)

WikiBERT Models: Deep Transfer Learning for Many Languages (2021)

Overview of DrugProt BioCreative VII track: quality evaluation and large scale text mining of drug-gene/protein relations (2021)

Beyond the English web: Zero-shot cross-lingual and lightweight monolingual classification of registers (2021)